Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs56244356 chr12:31754306 C/T 4.74E-6 495 31.7 31.43 17.13 KM Plot
THCA rs56244720 chr7:32783178 C/T 9.88E-5 497 31.47 32.3 31.97 KM Plot
THCA rs56258328 chr20:47283781 C/G 0 500 31.68 32.07 6.78 KM Plot
THCA rs56272198 chr10:81617626 TA/T 9.58E-10 486 31.72 30.78 14.52 KM Plot
THCA rs56276627 chr20:61488097 T/G 6.24E-5 493 30.82 33.87 37.48 KM Plot
THCA rs56305508 chr8:58117581 G/A 4.95E-5 503 31.15 38.17 34.8 KM Plot
THCA rs56327912 chr11:123526139 T/C 2.86E-5 497 31.87 28.85 26.73 KM Plot
THCA rs56343427 chr20:47355273 C/T 9.31E-9 493 31.47 33.7 18.22 KM Plot
THCA rs56377135 chr19:9820116 C/T 4.26E-6 503 31.42 33.53 32.9 KM Plot
THCA rs56383336 chr8:58112247 A/C 1.22E-15 494 31.37 37.97 32.1 KM Plot
THCA rs56708826 chr3:53963709 G/A 1.31E-8 498 31.47 31.02 17.8 KM Plot
THCA rs56709160 chr3:97199660 G/A 5.98E-5 492 31.4 34.1 31.2 KM Plot
THCA rs57015152 chr7:43210767 A/G 4.06E-7 492 31.7 31.37 31.47 KM Plot
THCA rs57024024 chr3:97197008 T/G 9.42E-7 502 31.43 33.92 29.17 KM Plot
THCA rs57096753 chr3:97199657 A/G 5.95E-5 493 31.38 34.1 31.2 KM Plot